Efficient amplification method for bisulfite sequencing PCR (BSP) fragments of plant gene promoters

A promoter and gene technology, applied in the field of high-efficiency amplification of plant gene promoter BSP fragments, can solve the problems of restricting experimental progress and low success rate of BSP fragments, and achieve the effect of improving amplification efficiency

Pending Publication Date: 2019-05-03
HUAIBEI NORMAL UNIVERSITY
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

The above-mentioned traditional experimental method not only consumes a lot of manpower and material resources, but also has a low success rate of BSP fragment amplificatio

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Example Embodiment

[0019] Example 1

[0020] A method for efficiently amplifying BSP fragments of plant gene promoters, characterized in that it comprises the following steps:

[0021] S1, design and artificially synthesize corresponding primer pairs according to the GC islands and high GC content regions of plant gene promoters;

[0022] S2, select the outermost primer combination of the two ends of the promoter to perform the first round of PCR amplification on the gene promoter, and 33 cycles of high-fidelity enzyme amplification. The specific cycle program is determined according to different plant species to obtain the first round of PCR products;

[0023] S3, the first round of PCR product was diluted with water by 10 times as a template, and a set of primers on the inner side was selected according to the size of the target fragment to be amplified for the second round of PCR amplification, high-fidelity enzyme amplification 35 cycles , The specific cycle program is determined by different plant spe

Example Embodiment

[0024] Example 2

[0025] Taking Arabidopsis as an example, the Arabidopsis FWA gene promoter BSP fragment was amplified. The DNA sequence of the Arabidopsis FWA gene promoter BSP fragment is as follows:

[0026] 5'-tttcggtcaatacaattttataatctttcattttttctatcatttcatatcattgtaactataaattttcgtaaatagacctttagtgttaatacaatagatttttattaattttatatcggattttgtttaaaaaagaaaaaccataggatggatgatgattggtacttataagattgtaattgggtatttttggattgttaccaccattacaaagctattaacagagattgaagatatcacacaatgagagcgccacagcttcagcaacgtcccatgcagctgatgtgccttcgcctttctcttcctcatctgcgcttataaataaggcaaagcaactagaaaagattaaaaccaaaaccaaaacaaaaaactagttaagaccctgattttgtttcataggtacatacacttttcaacattgatttttgttgttaaaaataaaatccatgtgaaggttctcatcatataccgaaagaatgggaaatttgaaaattccatacttttttaaaaagacaatttgttttatcactttagtttttttatatattcagcgtctaccaaatctacacttttttttctttctcgatttagttaatcttcgttcttgtgtcatgtaatagattactatttcaaaacatagatatttagttatctaaataaaactaggccatccatggatggtttcaattttttttttcatatgaaagaaaagttaaatttcatttcacaataaccattgattactaaatttagtaaagaatcaattgggtttagtgtttact

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Abstract

The invention belongs to the technical field of molecular biology, and especially relates to an efficient amplification method for bisulfite sequencing PCR (BSP) fragments of plant gene promoters. Theefficient amplification method for the BSP fragments of the plant gene promoters comprises the following steps: designing and artificially synthesizing corresponding primer logarithms according to GCislands and high-GC-content regions of a gene promoter; performing first-round PCR amplification on the gene promoter by selecting the outermost primer combinations at both ends, and carrying out 33cycles of high-fidelity enzyme amplification so as to obtain a first-round PCR product; and then, diluting the first-round PCR product for 10 times by using water, selecting primer combinations at both ends on the inside, carrying out second-round PCR amplification, and carrying out 35 cycles of high-fidelity enzyme amplification so as to obtain an amplification product. The efficient amplification method for the BSP fragments of the plant gene promoters is capable of improving amplification efficiency of BSP fragments of plant gene promoters, thereby enhancing guarantee for analysis on methylation modification of plant gene promoters by using bisulphite sequencing.

Description

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Claims

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Application Information

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Owner HUAIBEI NORMAL UNIVERSITY
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