Nucleotide and/or oligonucleotide and preparation method thereof

一种寡核苷酸、核苷酸的技术,应用在化学仪器和方法、糖衍生物制备、糖衍生物等方向,能够解决成本高、合成规模小等问题,达到节省原料、降低成本的效果

Active Publication Date: 2014-07-23
KUNSHAN RNAI INST
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  • Summary
  • Abstract
  • Description
  • Claims
  • Application Information

AI Technical Summary

Problems solved by technology

[0005] The purpose of the present invention is to provide a method for synthesizing RNA by the liquid-phase hydrogen phosphonic acid method, which overcomes the shortcomings of the current solid-phase oligonucleotide synthesis method, such as small synthesis scale and high cost, and provides a method capable of large-scale synthesis of oligonucleotides sour method

Method used

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Examples

Experimental program
Comparison scheme
Effect test

Embodiment approach

[0062] According to a preferred embodiment of the present invention, wherein, the method may also include the following steps:

[0063] In the second liquid reaction medium, the substance of formula (4) is contacted with the substance of formula (5) to obtain the substance of formula (6);

[0064] Formula (5)

[0065]

[0066] Formula (6)

[0067] Among them, in formula (5) and formula (6), R 1 , R 2 , R 3 , R 4 , R 5 , R 6 , R 7 and R 8 The definition of is the same as that in formula (1).

[0068] Wherein, relative to 1 mole of the substance of the formula (4), the amount of the second liquid reaction medium can be 5-50 L, and the amount of the substance of the formula (5) can be 1-10 moles; the reaction temperature can be minus 50 ° C to 50°C; the reaction time can be 0.2-10 hours.

[0069] Wherein, the second liquid reaction medium may be pyridine or a mixed solution of pyridine and one or more of dichloromethane, acetonitrile, dioxane and tetrahydrofuran. ...

Embodiment 1

[0115] This embodiment synthesizes the substance of formula (1), wherein m and n are 0, R is trityl, R 5 and R 6 for -CH 2 CH 2 CN, R 7 is tert-butyldimethylsilyl, R 8 For uracil, the substance of the formula (1) is named as Tr[U]BH 3 .

[0116] PCl 3 (468mg, 3.4mmol) was dissolved in 20ml of the seventh liquid reaction medium (tetrahydrofuran), and at -78°C, added 2,6-lutidine (1.64g, 15.3mmol) and dissolved in 20ml of the seventh liquid reaction medium Formula (9) compound (wherein n is 0, R 1 is trityl, R 7 is tert-butyldimethylsilyl and R 8 Uracil, that is, 5'-O-Tr-2'O-TBDMS-rU, purchased from Shanghai Gemma Pharmaceutical Technology Co., Ltd., 1.0g, 1.7mmol), maintained for 5min.

[0117] Then, 3-hydroxypropionitrile (905 mg, 12.8 mmol) was added dropwise for 20 min.

[0118] Then, the temperature was raised to -20°C, and BH dissolved in the seventh liquid reaction medium (tetrahydrofuran, 7ml) was added dropwise. 3 (7 mmol), after maintaining at 0°C for 30 mi...

Embodiment 2

[0121] This embodiment synthesizes the substance of formula (3), wherein, y is 0, R 1 is trityl, R 7 is tert-butyldimethylsilyl, R 8 For uracil, the substance of the formula (1) is named Tr[U]PH, specifically through the above-mentioned Tr[U]BH 3 take off R 5 、BH 3 group and R 6 to fulfill.

[0122] At room temperature, in the third liquid reaction medium (CH 3 CN, 30ml), the Tr[U]BH 3 (784mg, 1mmol) was kept in contact with triethylamine (10ml) for 15min. Then concentrated under reduced pressure and sucked dry, promptly took off Tr[U]BH 3 R in 5 (-CH 2 CH 2 CN).

[0123] At 0°C, in the fourth liquid reaction medium (dichloromethane, 170ml), the dried solid product was kept in contact with dichloroacetic acid (5mmol) and methoxytrityl alcohol (735mg, 2.1mmol) for 10min . The reaction was quenched by adding 100 ml of saturated sodium bicarbonate solution. The reaction liquid was extracted twice with dichloromethane, 50 ml each time. Combine the extracted organic...

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PUM

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Abstract

The invention discloses a nucleotide and / or oligonucleotide represented by the formula (1) and a preparation method thereof. In the preparation method, protected nucleotide and / or oligonucleotide is taken as the raw material, the synthesis reaction is carried out in a reaction bottle or a reactor, thus the synthesis reaction is not restricted by the solid carrier or synthesizer, so large-scale preparation of nucleotide and / or oligonucleotide is achieved.

Description

technical field [0001] The present invention relates to the field of chemical biology, in particular to a nucleotide and / or oligonucleotide and a preparation method of the nucleotide and / or oligonucleotide. Background technique [0002] Chemical synthesis of oligonucleotides refers to the process of linking multiple nucleotide units into an oligonucleotide chain by promoting the formation of 5'-3' phosphodiester bonds between nucleotide monomers, involving a protected core Synthesis of glycosides. [0003] The methods for synthesizing oligonucleotides include solid-phase synthesis and liquid-phase synthesis. The solid-phase synthesis usually uses the phosphoramidite condensation reaction, and the liquid-phase synthesis usually uses the phosphotriester condensation reaction or the hydrogen phosphonate condensation reaction. Compared with solid-phase synthesis, liquid-phase synthesis has the characteristics of easy identification of intermediates and easy scale of reaction. ...

Claims

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Application Information

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Patent Type & Authority Applications(China)
IPC IPC(8): C07H19/10C07H21/02C07H1/00
Inventor 席真黄金宇陆威
Owner KUNSHAN RNAI INST
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